MolNFT v1 · #14708 · protein
Non-specific lipid transfer protein 1 from barley in complex with L-alfa-lysophosphatidylcholine, laudoyl
1MID · Nonspecific lipid-transfer protein 1: “Non-specific lipid transfer protein 1 from barley in complex with L-alfa-lysophosphatidylcholine, laudoyl”. X-ray diffraction, 1 ligand (LAP), 1 pocket (best druggability 0.81). MolNFT v1…
- PDB
- 1MID
- Type
- protein
- Length
- 91 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonspecific lipid-transfer protein 1
- UniProt
- P07597
- Ligands
- LAP
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nonspecific lipid-transfer protein 1 | protein | 91 | 63% helix, 0% strand | P07597 |
Ligands and binding sites
- LAP · [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium · ligand · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 369 | 0.81 | 0.89 | 37 | LAP |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1MID · Non-specific lipid transfer protein 1 from barley in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- P07597 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein 1 (P07597) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07597
- Elsewhere: RCSB PDB 1MID · PDBe 1MID · UniProt P07597
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