MolNFT v1 · #147008 · protein
Ebola virus makona variant gp (mucin-deleted) in complex with pan- ebolavirus human antibody adi-15878 Fab
6DZL: “Ebola virus makona variant gp (mucin-deleted) in complex with pan- ebolavirus human antibody adi-15878 Fab”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #147008 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6DZL
- Type
- protein
- Length
- 1,587 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0F7IM40, P87666
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 213 | — | A0A0F7IM40 |
| D, E, F | — | protein | 89 | — | P87666 |
| J, K, L | — | protein | 106 | — | — |
| G, H, I | — | protein | 121 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 18 copies · chains A, D, G, B, E, H, C, F, I
- MAN · alpha-D-mannopyranose · sugar · 9 copies · chains A, J, B, K, C, L
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DZL · Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human… · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F7IM40
- Every structure of UniProt P87666
- Elsewhere: RCSB PDB 6DZL · PDBe 6DZL · UniProt A0A0F7IM40 · UniProt P87666
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