MolNFT v1 · #146987 · protein
Crystal structure of helicobacter pylori 5'-METHYLTHIOADENOSINE/S- adenosyl homocysteine nucleosidase (mtan) complexed with (3R,4S)-1- ((4-amino-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL)-4-(((3-(1-butyl-1H- 1,2,3-triazol-4-YL)PROPYL)THIO)METHYL)PYRROLIDIN-3-ol
6DYY: “Crystal structure of helicobacter pylori 5'-METHYLTHIOADENOSINE/S- adenosyl homocysteine nucleosidase (mtan)…”. X-ray diffraction, 2 ligands (OS6, MG). MolNFT v1 #146987 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DYY
- Type
- protein
- Length
- 924 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1W0VQJ9
- Ligands
- OS6, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 232 | — | A0A1W0VQJ9 |
| B, C | — | protein | 230 | — | A0A1W0VQJ9 |
Ligands and binding sites
- OS6 · (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl) methyl]-4-({[3-(1-butyl-1H-1,2,3-triazol-4-yl) propyl]sulfanyl}methyl)pyrrolidin-3-ol · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 2 copies · chains B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DYY · Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1W0VQJ9
- Elsewhere: RCSB PDB 6DYY · PDBe 6DYY · UniProt A0A1W0VQJ9
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