MolNFT v1 · #146927 · protein
Crystal structure of chalcone synthase from selaginella moellendorffii
6DX8: “Crystal structure of chalcone synthase from selaginella moellendorffii”. X-ray diffraction, 7 pockets (best druggability 0.80). MolNFT v1 #146927 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DX8
- Type
- protein
- Length
- 757 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chalcone synthase
- UniProt
- D8S128
- Pockets
- 7 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chalcone synthase | protein | 378 | 43% helix, 24% strand | D8S128 |
| B | Chalcone synthase | protein | 379 | 42% helix, 23% strand | D8S128 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 417 | 0.80 | 0.88 | 65 | empty |
| 2 | 393 | 0.79 | 0.88 | 60 | empty |
| 3 | 66 | 0.74 | 0.99 | 21 | empty |
| 4 | 59 | 0.72 | 0.99 | 22 | empty |
| 5 | 183 | 0.50 | 0.77 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 2274 Ų buried · 52 hydrogen bonds · protein-protein
Compared structures
- 6DX8 · Crystal structure of chalcone synthase from Selaginella moellendorffii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D8S128
- Elsewhere: RCSB PDB 6DX8 · PDBe 6DX8 · UniProt D8S128
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