MolNFT v1 · #146906 · protein

Structure of the 4462 antibody Fab fragment bound to a staphylococcus aureus wall techoic acid analog

6DWI: “Structure of the 4462 antibody Fab fragment bound to a staphylococcus aureus wall techoic acid analog”. X-ray diffraction, 2 ligands (HD4, CL). MolNFT v1 #146906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6DWI
Type: protein
Length: 3,337 residues
Chains: 16
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Ligands: HD4, CL

Structure

x-ray diffraction · 11 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, G, I, K, O	—	protein	211	—	—
B	—	protein	202	—	—
C	—	protein	206	—	—
D, H	—	protein	212	—	—
E	—	protein	205	—	—
F	—	protein	200	—	—
J	—	protein	214	—	—
L	—	protein	211	—	—
M	—	protein	207	—	—
N	—	protein	209	—	—
P	—	protein	204	—	—

Ligands and binding sites

HD4 · 4-O-[2-acetamido-2-deoxy-beta-D-glucopyranosyl]-1-O-phosphono-D-ribitol · ligand · 4 copies · chains C, D, G, H, I, J, K, L
CL · Chloride ion · ion · 6 copies · chains A, B, C, D, F, G, H, O, P
GOL · Glycerol · additive · 2 copies · chains H, I, J
FLC · Citrate anion · additive · chains G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6DWI · Structure of the 4462 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6DWI · PDBe 6DWI

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