MolNFT v1 · #146877 · RNA
Computationally designed mini tetraloop-tetraloop receptor by the rnamake program - construct 6 (minittr 6)
6DVK · RNA (95-mer): “Computationally designed mini tetraloop-tetraloop receptor by the rnamake program - construct 6 (minittr 6)”. X-ray diffraction, 2 ligands (MG, CO), 2 pockets (best druggability 0.62). MolNFT v1 #146877 on GenesisL1…
- PDB
- 6DVK
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (95-mer)
- Ligands
- MG, CO
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | RNA (95-mer) | rna | 94 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 533 | 0.62 | 0.76 | 34 | MG |
| 2 | 87 | 0.29 | 0.73 | 13 | empty |
Compared structures
- 6DVK · Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DVK · PDBe 6DVK
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