MolNFT v1 · #146843 · protein

Toxoplasma gondii myoa, a class-xiv myosin, in the pre-powerstroke state

6DUE · Myosin a: “Toxoplasma gondii myoa, a class-xiv myosin, in the pre-powerstroke state”. X-ray diffraction, 3 ligands (ADP, ALF, MG), 8 pockets (best druggability 0.78). MolNFT v1 #146843 on GenesisL1: 3D structure, binding sites and…

PDB: 6DUE
Type: protein
Length: 737 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myosin a
UniProt: S7W634
Ligands: ADP, ALF, MG
Pockets: 8 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myosin a	protein	737	46% helix, 17% strand	S7W634

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
ALF · Tetrafluoroaluminate ion · ligand · chains A
MG · Magnesium ion · metal · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1076	0.78	0.80	73	GOL
2	75	0.75	0.97	16	empty
3	325	0.66	0.81	34	empty
4	369	0.65	0.80	54	ADP, ALF, MG
5	63	0.50	0.85	12	empty

Compared structures

6DUE · Toxoplasma gondii MyoA, a Class-XIV myosin, in the pre-powerstroke state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt S7W634
Elsewhere: RCSB PDB 6DUE · PDBe 6DUE · UniProt S7W634

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