MolNFT v1 · #146814 · protein
Crystal structure of haemophilus influenzae oppa complex with ylgangrgggs
6DTG · Periplasmic oligopeptide-binding protein: “Crystal structure of haemophilus influenzae oppa complex with ylgangrgggs”. X-ray diffraction, 2 pockets (best druggability 0.47). MolNFT v1 #146814 on GenesisL1: 3D structure, binding…
- PDB
- 6DTG
- Type
- protein
- Length
- 528 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic oligopeptide-binding protein; Tyr-leu-gly-ala-asn-gly
- UniProt
- Q4QLH0
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic oligopeptide-binding protein | protein | 522 | 34% helix, 22% strand | Q4QLH0 |
| B | Tyr-leu-gly-ala-asn-gly | protein | 6 | 0% helix, 17% strand | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.47 | 0.84 | 21 | empty |
| 2 | 120 | 0.43 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 699 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6DTG · Crystal structure of Haemophilus influenzae OppA complex with YLGANGRGGGS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4QLH0
- Elsewhere: RCSB PDB 6DTG · PDBe 6DTG · UniProt Q4QLH0
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