MolNFT v1 · #146724 · protein
Sfgfp N149 mutated to 4-nitro-L-phenylalanine
6DQ1: “Sfgfp N149 mutated to 4-nitro-L-phenylalanine”. X-ray diffraction, 2 ligands (CRO, NA), 1 pocket (best druggability 0.77). MolNFT v1 #146724 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DQ1
- Type
- protein
- Length
- 232 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sfgfp
- Ligands
- CRO, NA
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sfgfp | protein | 232 | 10% helix, 51% strand | — |
Ligands and binding sites
- CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.77 | 0.97 | 27 | CRO |
Modifications
Observed in the structure: 2 cofactor, 1 modified (chromophore, nonstandard).
Compared structures
- 6DQ1 · sfGFP N149 mutated to 4-nitro-L-phenylalanine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DQ1 · PDBe 6DQ1
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