MolNFT v1 · #146624 · RNA
Crystal structure of the FMN riboswitch bound to BRX1555 split RNA
6DN3: “Crystal structure of the FMN riboswitch bound to BRX1555 split RNA”. X-ray diffraction, 4 ligands (GZ4, MG, K). MolNFT v1 #146624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DN3
- Type
- RNA
- Length
- 109 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GZ4, MG, K, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | — | rna | 53 | — | — |
| Y | — | rna | 56 | — | — |
Ligands and binding sites
- GZ4 · 7,8-dimethyl-2,4-dioxo-10-(3-phenylpropyl)-1,2,3,4-tetrahydrobenzo[g]pteridin-10-ium · ligand · chains X, Y
- MG · Magnesium ion · metal · 7 copies · chains X, Y
- K · Potassium ion · metal · chains Y
- CL · Chloride ion · ion · chains X, Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DN3 · Crystal structure of the FMN riboswitch bound to BRX1555 split RNA · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DN3 · PDBe 6DN3
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