MolNFT v1 · #146606 · protein
A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human crebbp
6DMK: “A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human crebbp”. X-ray diffraction, 2 ligands (2LL, NO3). MolNFT v1 #146606 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DMK
- Type
- protein
- Length
- 113 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q92793
- Ligands
- 2LL, NO3
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 113 | — | Q92793 |
Ligands and binding sites
- 2LL · 5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[2-(morpholin-4-yl) ethyl]-2-(2-phenylethyl)-1H-benzimidazole · ligand · chains A
- NO3 · Nitrate ion · ion · chains A
- EDO · 1,2-ethanediol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DMK · A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the… · the same entry in another collection · chain A against A, TM-score 1.00
- Q92793 · AlphaFold monomer V2.0 prediction for creb-binding protein (Q92793) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92793
- Elsewhere: RCSB PDB 6DMK · PDBe 6DMK · UniProt Q92793
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