MolNFT v1 · #146565 · protein
Crystal structure of IGLON5/NEGR1 heterodimer
6DLD: “Crystal structure of IGLON5/NEGR1 heterodimer”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #146565 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DLD
- Type
- protein
- Length
- 1,056 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A6NGN9, Q7Z3B1
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 273 | — | A6NGN9 |
| B | — | protein | 247 | — | Q7Z3B1 |
| C | — | protein | 267 | — | A6NGN9 |
| D | — | protein | 269 | — | Q7Z3B1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 17 copies · chains A, D, B, C
- BMA · beta-D-mannopyranose · sugar
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DLD · Crystal structure of IgLON5/NEGR1 heterodimer · the same entry in another collection · chain D against D, TM-score 1.00
- Q7Z3B1 · AlphaFold monomer V2.0 prediction for neuronal growth regulator 1 (Q7Z3B1) · a predicted model of the same protein · chain B against A, TM-score 0.93
- A6NGN9 · AlphaFold monomer V2.0 prediction for iglon family member 5 (A6NGN9) · a predicted model of the same protein · chain C against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6NGN9
- Every structure of UniProt Q7Z3B1
- Elsewhere: RCSB PDB 6DLD · PDBe 6DLD · UniProt A6NGN9 · UniProt Q7Z3B1
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