MolNFT v1 · #146564 · protein
Designed protein DHD1:234_A, designed protein DHD1:234_B
6DLC: “Designed protein DHD1:234_A, designed protein DHD1:234_B”. X-ray diffraction, 2 pockets (best druggability 0.45). MolNFT v1 #146564 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DLC
- Type
- protein
- Length
- 138 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Designed protein DHD1:234_A; Designed protein DHD1:234_B
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Designed protein DHD1:234_A | protein | 105 | 90% helix, 0% strand | — |
| B | Designed protein DHD1:234_B | protein | 33 | 91% helix, 0% strand | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.45 | 0.78 | 16 | empty |
| 2 | 82 | 0.42 | 0.78 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1161 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6DLC · Designed protein DHD1:234_A, Designed protein DHD1:234_B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DLC · PDBe 6DLC
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