MolNFT v1 · #146520 · protein
FAKO VIRUS
6DJY · Clamp protein: “FAKO VIRUS”. Electron microscopy, 20 pockets (best druggability 0.89). MolNFT v1 #146520 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DJY
- Type
- protein
- Length
- 3,499 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Clamp protein; Major capsid protein; Turret protein
- UniProt
- A0A0A0UEE5, A0A0A0U7Z7, A0A0A0U955
- Pockets
- 20 · best druggability 0.89
Structure
electron microscopy · 4 distinct chains · 30% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Clamp protein | protein | 281 | 39% helix, 11% strand | A0A0A0UEE5 |
| B | Major capsid protein | protein | 1121 | 28% helix, 15% strand | A0A0A0U7Z7 |
| C | Major capsid protein | protein | 1041 | 30% helix, 15% strand | A0A0A0U7Z7 |
| D | Turret protein | protein | 1056 | 29% helix, 14% strand | A0A0A0U955 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 914 | 0.89 | 0.91 | 110 | empty |
| 2 | 749 | 0.87 | 0.90 | 110 | empty |
| 3 | 704 | 0.85 | 0.89 | 77 | empty |
| 4 | 323 | 0.76 | 0.88 | 54 | empty |
| 5 | 423 | 0.74 | 0.84 | 70 | empty |
Interfaces
6 interfaces between chains.
- B–C · 2211 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 1704 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 1442 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 662 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 503 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6DJY · Fako virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0UEE5
- Every structure of UniProt A0A0A0U7Z7
- Every structure of UniProt A0A0A0U955
- Elsewhere: RCSB PDB 6DJY · PDBe 6DJY · UniProt A0A0A0UEE5 · UniProt A0A0A0U7Z7 · UniProt A0A0A0U955
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