MolNFT v1 · #146502 · protein
Crystal structure of TDP1 catalytic domain in complex with compound XZ503
6DJG: “Crystal structure of TDP1 catalytic domain in complex with compound XZ503”. X-ray diffraction, 1 ligand (GNJ). MolNFT v1 #146502 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DJG
- Type
- protein
- Length
- 876 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- GNJ
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- GNJ · 4-hydroxy-8-sulfoquinoline-3-carboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DJG · Crystal structure of Tdp1 catalytic domain in complex with compound XZ503 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NUW8 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 1 (Q9NUW8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6DJG · PDBe 6DJG · UniProt Q9NUW8
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