MolNFT v1 · #146501 · protein
Crystal structure of TDP1 catalytic domain in complex with compound XZ502
6DJF: “Crystal structure of TDP1 catalytic domain in complex with compound XZ502”. X-ray diffraction, 1 ligand (GNV). MolNFT v1 #146501 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DJF
- Type
- protein
- Length
- 876 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- GNV
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- GNV · 4-hydroxyquinoline-3,8-dicarboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DJF · Crystal structure of Tdp1 catalytic domain in complex with compound XZ502 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NUW8 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 1 (Q9NUW8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6DJF · PDBe 6DJF · UniProt Q9NUW8
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