MolNFT v1 · #146499 · protein
Crystal structure of TDP1 catalytic domain in complex with zenobia fragment ZT1982 (single soak)
6DJD: “Crystal structure of TDP1 catalytic domain in complex with zenobia fragment ZT1982 (single soak)”. X-ray diffraction, 1 ligand (GJP). MolNFT v1 #146499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DJD
- Type
- protein
- Length
- 876 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- GJP
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- GJP · 4-hydroxyquinoline-3-carboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DJD · Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT1982… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NUW8 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 1 (Q9NUW8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6DJD · PDBe 6DJD · UniProt Q9NUW8
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