MolNFT v1 · #146447 · protein
Crystal structure of TDP1 catalytic domain in complex with zenobia fragment ZT0911 from cocktail soak
6DHU: “Crystal structure of TDP1 catalytic domain in complex with zenobia fragment ZT0911 from cocktail soak”. X-ray diffraction, 1 ligand (GHM). MolNFT v1 #146447 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DHU
- Type
- protein
- Length
- 875 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- GHM
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 437 | — | Q9NUW8 |
| B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- GHM · benzene-1,2,4-tricarboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DHU · Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT0911 from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NUW8 · AlphaFold monomer V2.0 prediction for tyrosyl-DNA phosphodiesterase 1 (Q9NUW8) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6DHU · PDBe 6DHU · UniProt Q9NUW8
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