MolNFT v1 · #146430 · protein

Crystal structure of HIV-1 protease NL4-3 I50V mutant in complex with UMASS1

6DH7: “Crystal structure of HIV-1 protease NL4-3 I50V mutant in complex with UMASS1”. X-ray diffraction, 2 ligands (K13, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #146430 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6DH7
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protease
UniProt: Q8ULI3
Ligands: K13, SO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Protease	protein	99	7% helix, 57% strand	Q8ULI3

Ligands and binding sites

K13 · (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{[(4-aminophenyl)sulfonyl][(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate · ligand · chains B, A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	343	0.72	0.84	35	K13

Interfaces

1 interface between chains.

B–A · 1814 Å² buried · 42 hydrogen bonds · protein-protein

Compared structures

6DH7 · Crystal structure of HIV-1 Protease NL4-3 I50V Mutant in complex with UMass1 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ULI3
Elsewhere: RCSB PDB 6DH7 · PDBe 6DH7 · UniProt Q8ULI3

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