MolNFT v1 · #146400 · protein
Crystal structure of the C-terminal catalytic domain of IS1535 tnpa, an IS607-like serine recombinase
6DGB · IS607 family transposase IS1535: “Crystal structure of the C-terminal catalytic domain of IS1535 tnpa, an IS607-like serine recombinase”. X-ray diffraction, 2 pockets (best druggability 0.34). MolNFT v1 #146400 on GenesisL1: 3D…
- PDB
- 6DGB
- Type
- protein
- Length
- 265 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IS607 family transposase IS1535
- UniProt
- A0A045HV29
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | IS607 family transposase IS1535 | protein | 133 | 49% helix, 15% strand | A0A045HV29 |
| B | IS607 family transposase IS1535 | protein | 132 | 49% helix, 14% strand | A0A045HV29 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.34 | 0.73 | 19 | empty |
| 2 | 73 | 0.29 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1934 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6DGB · Crystal structure of the C-terminal catalytic domain of IS1535 TnpA, an IS607-like serine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A045HV29
- Elsewhere: RCSB PDB 6DGB · PDBe 6DGB · UniProt A0A045HV29
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