MolNFT v1 · #146335 · protein
Crystal structure of a DNA polymerase III subunit beta dnan sliding clamp from bartonella birtlesii ll-WM9
6DEG · Beta sliding clamp: “Crystal structure of a DNA polymerase III subunit beta dnan sliding clamp from bartonella birtlesii ll-WM9”. X-ray diffraction, 4 pockets (best druggability 0.74). MolNFT v1 #146335 on GenesisL1: 3D structure…
- PDB
- 6DEG
- Type
- protein
- Length
- 700 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta sliding clamp
- UniProt
- J1IY24
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta sliding clamp | protein | 349 | 21% helix, 46% strand | J1IY24 |
| B | Beta sliding clamp | protein | 351 | 21% helix, 45% strand | J1IY24 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.74 | 0.98 | 17 | empty |
| 2 | 52 | 0.63 | 0.93 | 24 | empty |
| 3 | 126 | 0.41 | 0.75 | 27 | empty |
| 4 | 78 | 0.32 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1230 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 6DEG · Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J1IY24
- Elsewhere: RCSB PDB 6DEG · PDBe 6DEG · UniProt J1IY24
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