MolNFT v1 · #146334 · protein
VPS1 GTPase-bse fusion complexed with gmppcp
6DEF: “VPS1 GTPase-bse fusion complexed with gmppcp”. X-ray diffraction, 2 ligands (GCP, MG). MolNFT v1 #146334 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DEF
- Type
- protein
- Length
- 1,429 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G0SFF0
- Ligands
- GCP, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 367 | — | G0SFF0 |
| B | — | protein | 358 | — | G0SFF0 |
| C | — | protein | 368 | — | G0SFF0 |
| D | — | protein | 336 | — | G0SFF0 |
Ligands and binding sites
- GCP · Phosphomethylphosphonic acid guanylate ester · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DEF · Vps1 GTPase-BSE fusion complexed with GMPPCP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0SFF0
- Elsewhere: RCSB PDB 6DEF · PDBe 6DEF · UniProt G0SFF0
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