MolNFT v1 · #146253 · protein
Directed evolutionary changes in kemp eliminase KE07 - crystal 25 round 7
6DC1: “Directed evolutionary changes in kemp eliminase KE07 - crystal 25 round 7”. X-ray diffraction, 1 ligand (6VP). MolNFT v1 #146253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DC1
- Type
- protein
- Length
- 3,020 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- 6VP
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, I, J | — | protein | 252 | — | — |
| B | — | protein | 252 | — | — |
| C, K | — | protein | 251 | — | — |
| D | — | protein | 250 | — | — |
| E, G | — | protein | 251 | — | — |
| F | — | protein | 256 | — | — |
| H | — | protein | 249 | — | — |
| L | — | protein | 253 | — | — |
Ligands and binding sites
- 6VP · 5-nitro-2-oxidanyl-benzenecarbonitrile · ligand · 4 copies · chains A, B, H, K
- B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, D, B, C
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains C, G
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DC1 · Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 25 round 7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6DC1 · PDBe 6DC1
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