MolNFT v1 · #146226 · protein

Crystal structure of vhh R303

6DBA · Nanobody vhh R303: “Crystal structure of vhh R303”. X-ray diffraction, 1 pocket (best druggability 0.69). MolNFT v1 #146226 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6DBA
Type: protein
Length: 246 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nanobody vhh R303
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Nanobody vhh R303	protein	123	6% helix, 52% strand	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	684	0.69	0.77	56	empty

Interfaces

1 interface between chains.

A–B · 272 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6DBA · Crystal Structure of VHH R303 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6DBA · PDBe 6DBA

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