MolNFT v1 · #146217 · protein
2.0 ångström resolution crystal structure of N-terminal ligand-binding domain of putative methyl-accepting chemotaxis protein from salmonella enterica
6DB1: “2.0 ångström resolution crystal structure of N-terminal ligand-binding domain of putative methyl-accepting…”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.68). MolNFT v1 #146217 on GenesisL1: 3D structure…
- PDB
- 6DB1
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative methyl-accepting chemotaxis protein
- UniProt
- Q8ZM14
- Ligands
- CL
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative methyl-accepting chemotaxis protein | protein | 137 | 84% helix, 0% strand | Q8ZM14 |
| B | Putative methyl-accepting chemotaxis protein | protein | 135 | 85% helix, 0% strand | Q8ZM14 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 542 | 0.68 | 0.78 | 46 | empty |
| 2 | 220 | 0.61 | 0.81 | 36 | empty |
| 3 | 101 | 0.40 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 896 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 6DB1 · 2.0 Angstrom Resolution Crystal Structure of N-Terminal Ligand-Binding Domain of Putative… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZM14
- Elsewhere: RCSB PDB 6DB1 · PDBe 6DB1 · UniProt Q8ZM14
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.