MolNFT v1 · #146151 · protein + DNA + RNA
Ternary rsago complex with guide RNA and target DNA containing a-a non-canonical pair at position 3
6D92: “Ternary rsago complex with guide RNA and target DNA containing a-a non-canonical pair at position 3”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #146151 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D92
- Type
- protein + DNA + RNA
- Length
- 1,592 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A4WYU7
- Ligands
- MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 758 | — | A4WYU7 |
| C, H | — | rna | 18 | — | — |
| G | — | dna | 19 | — | — |
| J | — | dna | 21 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, C, F, H
- ACT · Acetate ion · additive · 4 copies · chains A, F
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains F, H, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D92 · Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4WYU7
- Elsewhere: RCSB PDB 6D92 · PDBe 6D92 · UniProt A4WYU7
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