MolNFT v1 · #146150 · protein
Crystal structure of the deinococcus radiodurans NRAMP/MNTH divalent transition metal transporter in the outward-open, apo conformation
6D91 · Divalent metal cation transporter mnth: “Crystal structure of the deinococcus radiodurans NRAMP/MNTH divalent transition metal transporter in the…”. X-ray diffraction, 4 pockets (best druggability 0.70). MolNFT v1 #146150 on…
- PDB
- 6D91
- Type
- protein
- Length
- 398 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Divalent metal cation transporter mnth
- UniProt
- Q9RTP8
- Pockets
- 4 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Divalent metal cation transporter mnth | protein | 398 | 80% helix, 0% strand | Q9RTP8 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.70 | 0.97 | 25 | empty |
| 2 | 272 | 0.62 | 0.80 | 33 | empty |
| 3 | 104 | 0.43 | 0.77 | 18 | OLC |
| 4 | 64 | 0.33 | 0.75 | 14 | empty |
Compared structures
- 6D91 · Crystal structure of the Deinococcus radiodurans Nramp/MntH divalent transition metal… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9RTP8 · AlphaFold monomer V2.0 prediction for divalent metal cation transporter mnth (Q9RTP8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RTP8
- Elsewhere: RCSB PDB 6D91 · PDBe 6D91 · UniProt Q9RTP8
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