MolNFT v1 · #146124 · protein + DNA + RNA
Rsago ternary complex with guide RNA and target DNA containing a-a bulge within the seed segment of the target strand
6D8A: “Rsago ternary complex with guide RNA and target DNA containing a-a bulge within the seed segment of the…”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #146124 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D8A
- Type
- protein + DNA + RNA
- Length
- 1,595 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A4WYU7
- Ligands
- MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 758 | — | A4WYU7 |
| C, H | — | rna | 18 | — | — |
| G | — | dna | 21 | — | — |
| J | — | dna | 22 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, C, F, H
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 5 copies · chains A, C, G, F, H, J
- ACT · Acetate ion · additive · chains F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D8A · RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4WYU7
- Elsewhere: RCSB PDB 6D8A · PDBe 6D8A · UniProt A4WYU7
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