MolNFT v1 · #145990 · protein

Crystal structure of a DNA polymerase III subunit beta dnan sliding clamp from rickettsia typhi str. wilmington

6D46 · Beta sliding clamp: “Crystal structure of a DNA polymerase III subunit beta dnan sliding clamp from rickettsia typhi str.…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.41). MolNFT v1 #145990 on GenesisL1: 3D…

PDB: 6D46
Type: protein
Length: 377 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta sliding clamp
UniProt: Q68WW0
Ligands: CL
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta sliding clamp	protein	377	23% helix, 43% strand	Q68WW0

Ligands and binding sites

CL · Chloride ion · ion · chains A
PG4 · Tetraethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.41	0.78	15	empty
2	73	0.37	0.77	16	PG4

Compared structures

6D46 · Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Rickettsia… · the same entry in another collection · chain A against A, TM-score 1.00
Q68WW0 · AlphaFold monomer V2.0 prediction for beta sliding clamp (Q68WW0) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q68WW0
Elsewhere: RCSB PDB 6D46 · PDBe 6D46 · UniProt Q68WW0

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