MolNFT v1 · #145949 · protein
Crystal structure of surface glycan-binding protein pbsgbp-B from prevotella bryantii
6D2Y · Pbsgbp-B lipoprotein: “Crystal structure of surface glycan-binding protein pbsgbp-B from prevotella bryantii”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.27). MolNFT v1 #145949 on GenesisL1: 3D structure…
- PDB
- 6D2Y
- Type
- protein
- Length
- 428 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pbsgbp-B lipoprotein
- UniProt
- D8DY16
- Ligands
- MG
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pbsgbp-B lipoprotein | protein | 428 | 7% helix, 37% strand | D8DY16 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.27 | 0.73 | 24 | empty |
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 6D2Y · Crystal structure of surface glycan-binding protein PbSGBP-B from Prevotella bryantii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D8DY16
- Elsewhere: RCSB PDB 6D2Y · PDBe 6D2Y · UniProt D8DY16
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