MolNFT v1 · #14592 · protein
Inosine monophosphate dehydrogenase (impdh) from tritrichomonas foetus with imp bound
1ME9 · Inosine-5'-monophosphate dehydrogenase: “Inosine monophosphate dehydrogenase (impdh) from tritrichomonas foetus with imp bound”. X-ray diffraction, 2 ligands (IMP, K), 4 pockets (best druggability 0.75). MolNFT v1 #14592 on…
- PDB
- 1ME9
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inosine-5'-monophosphate dehydrogenase
- EC
- 1.1.1.205
- UniProt
- P50097
- Ligands
- IMP, K
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) | protein | 350 | 36% helix, 20% strand | P50097 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 565 | 0.75 | 0.82 | 56 | IMP |
| 2 | 66 | 0.34 | 0.77 | 17 | empty |
| 3 | 74 | 0.31 | 0.74 | 21 | empty |
| 4 | 71 | 0.29 | 0.72 | 23 | empty |
Modifications
Observed in the structure: 1 disulfide, 1 modified (disulfide, oxidation).
Compared structures
- 1ME9 · Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with IMP bound · the same entry in another collection · chain A against A, TM-score 1.00
- P50097 · AlphaFold monomer V2.0 prediction for inosine-5'-monophosphate dehydrogenase (P50097) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50097
- Elsewhere: RCSB PDB 1ME9 · PDBe 1ME9 · UniProt P50097
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