MolNFT v1 · #145897 · protein

Crystal structure of ndm-1 complexed with compound 8

6D1F: “Crystal structure of ndm-1 complexed with compound 8”. X-ray diffraction, 2 ligands (P9T, ZN). MolNFT v1 #145897 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6D1F
Type: protein
Length: 229 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: C7C422
Ligands: P9T, ZN

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	229	—	C7C422

Ligands and binding sites

P9T · [(5,7-difluoro-2-oxo-2H-1-benzopyran-4-yl) methyl]phosphonic acid · ligand · chains A
ZN · Zinc ion · metal · 2 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6D1F · Crystal structure of NDM-1 complexed with compound 8 · the same entry in another collection · chain A against A, TM-score 1.00
C7C422 · AlphaFold monomer V2.0 prediction for metallo-beta-lactamase type 2 (C7C422) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7C422
Elsewhere: RCSB PDB 6D1F · PDBe 6D1F · UniProt C7C422

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