MolNFT v1 · #145564 · protein
Cryoem structure of human enterovirus D68 a-particle (pH 7.2 and 4 degrees celsius)
6CRS · Viral protein 1: “Cryoem structure of human enterovirus D68 a-particle (pH 7.2 and 4 degrees celsius)”. Electron microscopy, 8 pockets (best druggability 0.69). MolNFT v1 #145564 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6CRS
- Type
- protein
- Length
- 691 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral protein 1; Viral protein 3; Viral protein 2
- UniProt
- A0A097BW12, A0A1I9KXX3
- Pockets
- 8 · best druggability 0.69
Structure
electron microscopy · 3 distinct chains · 9% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral protein 1 | protein | 212 | 7% helix, 40% strand | A0A097BW12 |
| B | Viral protein 3 | protein | 244 | 9% helix, 33% strand | A0A097BW12 |
| C | Viral protein 2 | protein | 235 | 10% helix, 29% strand | A0A1I9KXX3 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 293 | 0.69 | 0.84 | 25 | empty |
| 2 | 149 | 0.43 | 0.75 | 25 | empty |
| 3 | 97 | 0.39 | 0.76 | 15 | empty |
| 4 | 106 | 0.35 | 0.74 | 23 | empty |
| 5 | 98 | 0.35 | 0.74 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–B · 3297 Ų buried · 45 hydrogen bonds · protein-protein
- B–C · 1803 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 1736 Ų buried · 42 hydrogen bonds · protein-protein
Compared structures
- 6CRS · CryoEM structure of human enterovirus D68 A-particle (pH 7.2 and 4 degrees Celsius) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A097BW12
- Every structure of UniProt A0A1I9KXX3
- Elsewhere: RCSB PDB 6CRS · PDBe 6CRS · UniProt A0A097BW12 · UniProt A0A1I9KXX3
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