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MolNFT v1 · #145500 · protein

Selenomethionine mutant (I6SEM) of protein GB1 examined by X-ray diffraction

6CPZ · Immunoglobulin G-binding protein G: “Selenomethionine mutant (I6SEM) of protein GB1 examined by X-ray diffraction”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #145500 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6CPZ
Type
protein
Length
112 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Immunoglobulin G-binding protein G
UniProt
P19909
Ligands
PO4

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 43% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BImmunoglobulin G-binding protein Gprotein5625% helix, 43% strandP19909

Ligands and binding sites

  • PO4 · Phosphate ion · ion · 4 copies · chains A, B
  • MRD · (4R)-2-methylpentane-2,4-diol · additive · 2 copies · chains A, B
  • MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 76 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

  • 6CPZ · Selenomethionine mutant (I6Sem) of protein GB1 examined by X-ray diffraction · the same entry in another collection · chain A against A, TM-score 1.00
  • P19909 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P19909) · a predicted model of the same protein · chain A against A, TM-score 0.97

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