MolNFT v1 · #145308 · RNA
G96A mutant of the prpp riboswitch from T. mathranii bound to ppgpp
6CK4: “G96A mutant of the prpp riboswitch from T. mathranii bound to ppgpp”. X-ray diffraction, 2 ligands (K, MG). MolNFT v1 #145308 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CK4
- Type
- RNA
- Length
- 419 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- K, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 103 | — | — |
| B | — | rna | 109 | — | — |
| C | — | rna | 107 | — | — |
| D | — | rna | 100 | — | — |
Ligands and binding sites
- K · Potassium ion · metal · 27 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 12 copies · chains A, B, C, D
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CK4 · G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp · the same entry in another collection · chain B against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6CK4 · PDBe 6CK4
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