MolNFT v1 · #145244 · protein
The structure of ycao from methanopyrus kandleri bound with amppcp and MG2+
6CIB: “The structure of ycao from methanopyrus kandleri bound with amppcp and MG2+”. X-ray diffraction, 3 ligands (ADP, OXM, MG). MolNFT v1 #145244 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CIB
- Type
- protein
- Length
- 2,170 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8TZ25
- Ligands
- ADP, OXM, MG
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 363 | — | Q8TZ25 |
| B | — | protein | 364 | — | Q8TZ25 |
| C | — | protein | 360 | — | Q8TZ25 |
| D | — | protein | 360 | — | Q8TZ25 |
| E | — | protein | 361 | — | Q8TZ25 |
| F | — | protein | 362 | — | Q8TZ25 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains A, B, C, D, E, F
- OXM · Oxamic acid · ligand · 6 copies · chains A, B, E, C, D, F
- MG · Magnesium ion · metal · 6 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CIB · The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TZ25
- Elsewhere: RCSB PDB 6CIB · PDBe 6CIB · UniProt Q8TZ25
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