MolNFT v1 · #145160 · protein
Bosea sp gapr solved in the presence of DNA
6CFX · UPF0335 protein ASE63_04290: “Bosea sp gapr solved in the presence of DNA”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.32). MolNFT v1 #145160 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CFX
- Type
- protein
- Length
- 301 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0335 protein ASE63_04290
- UniProt
- A0A0Q9HY32
- Ligands
- PO4
- Pockets
- 3 · best druggability 0.32
Structure
x-ray diffraction · 4 distinct chains · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0335 protein ASE63_04290 | protein | 73 | 85% helix, 0% strand | A0A0Q9HY32 |
| B | UPF0335 protein ASE63_04290 | protein | 74 | 86% helix, 0% strand | A0A0Q9HY32 |
| C | UPF0335 protein ASE63_04290 | protein | 76 | 80% helix, 0% strand | A0A0Q9HY32 |
| D | UPF0335 protein ASE63_04290 | protein | 78 | 87% helix, 0% strand | A0A0Q9HY32 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains B, D, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.32 | 0.76 | 11 | empty |
| 2 | 50 | 0.31 | 0.77 | 12 | empty |
| 3 | 62 | 0.28 | 0.73 | 14 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1366 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 1329 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 1038 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 945 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 385 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6CFX · Bosea sp GapR solved in the presence of DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q9HY32
- Elsewhere: RCSB PDB 6CFX · PDBe 6CFX · UniProt A0A0Q9HY32
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