MolNFT v1 · #145143 · protein
ADEP4 bound to E. faecium clpp
6CFD: “ADEP4 bound to E. faecium clpp”. X-ray diffraction, 1 ligand (EZA). MolNFT v1 #145143 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CFD
- Type
- protein
- Length
- 2,548 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A133CH35
- Ligands
- EZA
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, M | — | protein | 181 | — | A0A133CH35 |
| B, N | — | protein | 182 | — | A0A133CH35 |
| C | — | protein | 180 | — | A0A133CH35 |
| E | — | protein | 184 | — | A0A133CH35 |
| F | — | protein | 183 | — | A0A133CH35 |
| G | — | protein | 182 | — | A0A133CH35 |
| I | — | protein | 188 | — | A0A133CH35 |
| K | — | protein | 183 | — | A0A133CH35 |
| L, S | — | protein | 180 | — | A0A133CH35 |
| T | — | protein | 181 | — | A0A133CH35 |
Ligands and binding sites
- EZA · N-[(6as,12s,15as,17r,21r,23as)-17,21-dimethyl-6,11,15, 20,23-pentaoxooctadecahydro-2H,6H,11H,15H-pyrido[2,1-i]dipyrrolo[2,1-C:2',1'-L][1,4,7,10, 13]oxatetraazacyclohexadecin-12-yl]-3,5-difluoro-nalpha-[(2E)-hept-2-enoyl]-L-phenylalaninamide · ligand · 11 copies · chains A, B, C, D, E, F, G, I, K, L, M, N, S, T
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 14 copies · chains A, B, C, D, E, F, G, I, K, L, M, N, S, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CFD · ADEP4 bound to E. faecium ClpP · the same entry in another collection · chain S against S, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A133CH35
- Elsewhere: RCSB PDB 6CFD · PDBe 6CFD · UniProt A0A133CH35
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