MolNFT v1 · #145135 · protein
Crystal structure of the A/VIET NAM/1203/2004(H5N1) influenza virus hemagglutinin in complex with small molecule N-cyclohexyltaurine
6CF5: “Crystal structure of the A/VIET NAM/1203/2004(H5N1) influenza virus hemagglutinin in complex with small…”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #145135 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CF5
- Type
- protein
- Length
- 1,497 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5EP31, Q6DQ18
- Ligands
- NAG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 324 | — | Q5EP31 |
| B, D | — | protein | 176 | — | Q6DQ18 |
| C, E | — | protein | 323 | — | Q5EP31 |
| F | — | protein | 175 | — | Q6DQ18 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 9 copies · chains A, E, C
- PEG · Di(hydroxyethyl)ether · additive · 9 copies · chains A, B, C, D, F, E
- GOL · Glycerol · additive · 4 copies · chains A, B, C, D, E, F
- NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 3 copies · chains A, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CF5 · Crystal structure of the A/Viet Nam/1203/2004(H5N1) influenza virus hemagglutinin in… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5EP31
- Every structure of UniProt Q6DQ18
- Elsewhere: RCSB PDB 6CF5 · PDBe 6CF5 · UniProt Q5EP31 · UniProt Q6DQ18
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