MolNFT v1 · #145125 · protein + DNA
MBD3 mbd in complex with methylated, non-palindromic cpg DNA: alternative interpretation of crystallographic data
6CEV: “MBD3 mbd in complex with methylated, non-palindromic cpg DNA: alternative interpretation of crystallographic…”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #145125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CEV
- Type
- protein + DNA
- Length
- 189 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O95983
- Ligands
- UNX
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 71 | — | O95983 |
| B | — | protein | 70 | — | O95983 |
| C, E | — | dna | 12 | — | — |
| D, F | — | dna | 12 | — | — |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 4 copies · chains A, C, D, F, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CEV · MBD3 MBD in complex with methylated, non-palindromic CpG DNA: alternative interpretation… · the same entry in another collection · chain F against F, TM-score 1.00
- O95983 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding domain protein 3 (O95983) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95983
- Elsewhere: RCSB PDB 6CEV · PDBe 6CEV · UniProt O95983
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