MolNFT v1 · #145109 · protein
Crystal structure of fragment 3-(1-methyl-2-oxo-1,2-dihydroquinoxalin- 3-YL)PROPIONIC acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
6CEE: “Crystal structure of fragment 3-(1-methyl-2-oxo-1,2-dihydroquinoxalin- 3-YL)PROPIONIC acid bound in the…”. X-ray diffraction, 3 ligands (EYM, ZN, UNX). MolNFT v1 #145109 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CEE
- Type
- protein
- Length
- 100 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBN7
- Ligands
- EYM, ZN, UNX
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 100 | — | Q9UBN7 |
Ligands and binding sites
- EYM · 3-(4-methyl-3-oxo-3,4-dihydroquinoxalin-2-yl)propanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- UNX · Unknown atom or ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CEE · Crystal structure of fragment 3-(1-Methyl-2-oxo-1,2-dihydroquinoxalin-3-yl)propionic acid… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 6CEE · PDBe 6CEE · UniProt Q9UBN7
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