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MolNFT v1 · #145022 · protein

Dnag primase C-terminal domain complex with ssb C-terminal peptide

6CBR · DNA PRIMASE,SINGLE-stranded DNA-binding protein chimera: “Dnag primase C-terminal domain complex with ssb C-terminal peptide”. X-ray diffraction, 1 pocket (best druggability 0.57). MolNFT v1 #145022 on GenesisL1: 3D structure…

PDB
6CBR
Type
protein
Length
284 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA PRIMASE,SINGLE-stranded DNA-binding protein chimera
UniProt
P0ABS5, A0A0K3FKM0
Pockets
1 · best druggability 0.57

Structure

x-ray diffraction · 2 distinct chains · 68% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA PRIMASE,SINGLE-stranded DNA-binding protein chimeraprotein14469% helix, 0% strandP0ABS5, A0A0K3FKM0
BDNA PRIMASE,SINGLE-stranded DNA-binding protein chimeraprotein14066% helix, 0% strandP0ABS5, A0A0K3FKM0

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13560.570.7633empty

Interfaces

1 interface between chains.

  • A–B · 232 Ų buried · 1 hydrogen bond · protein-protein

Compared structures

  • 6CBR · DnaG Primase C-terminal domain complex with SSB C-terminal peptide · the same entry in another collection · chain A against A, TM-score 1.00
  • P0ABS5 · AlphaFold monomer V2.0 prediction for DNA primase (P0ABS5) · a predicted model of the same protein · chain B against A, TM-score 0.84

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