MolNFT v1 · #144837 · protein

Mycobacterium tuberculosis adenosine kinase bound to iodotubercidin

6C67: “Mycobacterium tuberculosis adenosine kinase bound to iodotubercidin”. X-ray diffraction, 3 ligands (5ID, NA, SO4). MolNFT v1 #144837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6C67
Type: protein
Length: 627 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P9WID5
Ligands: 5ID, NA, SO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	313	—	P9WID5
B	—	protein	314	—	P9WID5

Ligands and binding sites

5ID · (2R,3R,4S,5R)-2-(4-amino-5-iodo-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)tetrahydrofuran-3, 4-diol · ligand · 4 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 2 copies · chains A, B
GOL · Glycerol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6C67 · Mycobacterium tuberculosis adenosine kinase bound to iodotubercidin · the same entry in another collection · chain A against A, TM-score 1.00
P9WID5 · AlphaFold monomer V2.0 prediction for adenosine kinase (P9WID5) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P9WID5
Elsewhere: RCSB PDB 6C67 · PDBe 6C67 · UniProt P9WID5

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