MolNFT v1 · #144833 · RNA
Crystal structure of the mango-II fluorescent aptamer bound to TO1- biotin
6C63: “Crystal structure of the mango-II fluorescent aptamer bound to TO1- biotin”. X-ray diffraction, 2 ligands (EKJ, K). MolNFT v1 #144833 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C63
- Type
- RNA
- Length
- 104 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- EKJ, K
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | rna | 36 | — | — |
| C | — | rna | 32 | — | — |
Ligands and binding sites
- EKJ · 4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium · ligand · 3 copies · chains A, B, C
- K · Potassium ion · metal · 8 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C63 · Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO1-Biotin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6C63 · PDBe 6C63
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