MolNFT v1 · #144801 · protein
Cross-alpha amyloid-like structure alphaamg - low resolution
6C4Z: “Cross-alpha amyloid-like structure alphaamg - low resolution”. X-ray diffraction, 1 ligand (NH2), 1 pocket (best druggability 0.39). MolNFT v1 #144801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C4Z
- Type
- protein
- Length
- 450 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cross-alpha amyloid-like structure alphaamg - low resolution
- Ligands
- NH2
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 88% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, P, O, R, Q, E, F, G, H, L, K, N, M, J, I | Cross-alpha amyloid-like structure alphaamg - low resolution | protein | 25 | 88% helix, 0% strand | — |
Ligands and binding sites
- NH2 · Amino group · ion · 18 copies · chains A, B, C, D, P, N, O, Q, R, E, F, H, G, I, L, K, M, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.39 | 0.81 | 16 | empty |
Interfaces
41 interfaces between chains.
- P–R · 631 Ų buried · 1 hydrogen bond · protein-protein
- D–F · 625 Ų buried · 2 hydrogen bonds · protein-protein
- L–N · 615 Ų buried · 2 hydrogen bonds · protein-protein
- F–H · 612 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 607 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6C4Z · Cross-alpha Amyloid-like Structure alphaAmG - low resolution · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6C4Z · PDBe 6C4Z
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