MolNFT v1 · #144799 · protein

Cross-alpha amyloid-like structure alphaammem

6C4X · Cross-alpha amyloid-like membrane peptide alpha-ammem: “Cross-alpha amyloid-like structure alphaammem”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #144799 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6C4X
Type: protein
Length: 195 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cross-alpha amyloid-like membrane peptide alpha-ammem
Ligands: ZN

Structure

x-ray diffraction · 2 distinct chains · 90% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	Cross-alpha amyloid-like membrane peptide alpha-ammem	protein	24	92% helix, 0% strand	—
F, G, H	Cross-alpha amyloid-like membrane peptide alpha-ammem	protein	25	88% helix, 0% strand	—

Ligands and binding sites

ZN · Zinc ion · metal · chains H
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

16 interfaces between chains.

D–F · 483 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 479 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 476 Å² buried · 0 hydrogen bonds · protein-protein
E–F · 469 Å² buried · 0 hydrogen bonds · protein-protein
G–H · 466 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6C4X · Cross-alpha Amyloid-like Structure alphaAmmem · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6C4X · PDBe 6C4X

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