MolNFT v1 · #144798 · protein
Structure of the yeast pichia membranifaciens cytochrome C
6C4W: “Structure of the yeast pichia membranifaciens cytochrome C”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.73). MolNFT v1 #144798 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C4W
- Type
- protein
- Length
- 109 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C | protein | 109 | 43% helix, 2% strand | — |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.73 | 0.89 | 34 | HEC |
Modifications
Observed in the structure: 2 cofactor, 1 modified (heme c attachment, methylation).
Compared structures
- 6C4W · Structure of the yeast Pichia membranifaciens cytochrome c · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6C4W · PDBe 6C4W
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