MolNFT v1 · #144793 · protein
Staphylopine dehydrogenase (saodh) - apo
6C4R: “Staphylopine dehydrogenase (saodh) - apo”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.80). MolNFT v1 #144793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C4R
- Type
- protein
- Length
- 427 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Staphylopine dehydrogenase
- UniProt
- A0A1Q4GXD5
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Staphylopine dehydrogenase | protein | 427 | 45% helix, 16% strand | A0A1Q4GXD5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.80 | 0.92 | 28 | empty |
| 2 | 1007 | 0.77 | 0.79 | 91 | SO4 |
| 3 | 66 | 0.34 | 0.77 | 21 | SO4 |
| 4 | 57 | 0.26 | 0.73 | 13 | empty |
Compared structures
- 6C4R · Staphylopine dehydrogenase (SaODH) - Apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q4GXD5
- Elsewhere: RCSB PDB 6C4R · PDBe 6C4R · UniProt A0A1Q4GXD5
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