MolNFT v1 · #144787 · protein

Yersinopine dehydrogenase (ypodh) - apo

6C4L: “Yersinopine dehydrogenase (ypodh) - apo”. X-ray diffraction, 2 pockets (best druggability 0.77). MolNFT v1 #144787 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6C4L
Type: protein
Length: 421 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yersinopine dehydrogenase
UniProt: Q8CKU7
Pockets: 2 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	Yersinopine dehydrogenase	protein	421	49% helix, 15% strand	Q8CKU7

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1112	0.77	0.79	86	empty
2	51	0.47	0.85	14	empty

Compared structures

6C4L · Yersinopine dehydrogenase (YpODH) - Apo · the same entry in another collection · chain C against C, TM-score 1.00
Q8CKU7 · AlphaFold monomer V2.0 prediction for yersinopine synthase (Q8CKU7) · a predicted model of the same protein · chain C against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8CKU7
Elsewhere: RCSB PDB 6C4L · PDBe 6C4L · UniProt Q8CKU7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.