MolNFT v1 · #144771 · protein

CHEY41PYTYRD54K from thermotoga maritima

6C40 · Chemotaxis protein chey: “CHEY41PYTYRD54K from thermotoga maritima”. X-ray diffraction, 1 ligand (CU), 1 pocket (best druggability 0.30). MolNFT v1 #144771 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6C40
Type: protein
Length: 236 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chemotaxis protein chey
UniProt: Q56312
Ligands: CU
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, D	Chemotaxis protein chey	protein	118	44% helix, 23% strand	Q56312

Ligands and binding sites

CU · Copper (II) ion · metal · 6 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.30	0.72	15	empty

Interfaces

1 interface between chains.

B–D · 93 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (nonstandard).

Compared structures

6C40 · CheY41PyTyrD54K from Thermotoga maritima · the same entry in another collection · chain B against B, TM-score 1.00
Q56312 · AlphaFold monomer V2.0 prediction for chemotaxis protein chey (Q56312) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56312
Elsewhere: RCSB PDB 6C40 · PDBe 6C40 · UniProt Q56312

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